3. Liga 2009/10 Liga
| # | Team | Sp | S | U | N | Tore | Diff | Pkt | Form | Tend. |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | VfL Osnabrück | 38 | 20 | 9 | 9 | 55:37 | +18 | 69:36 | ▲ | |
| 2 | FC Erzgebirge Aue | 38 | 20 | 8 | 10 | 57:41 | +16 | 68:38 | ▼ | |
| 3 | FC Ingolstadt 04 | 38 | 18 | 10 | 10 | 72:46 | +26 | 64:40 | – | |
| 4 | Eintracht Braunschweig | 38 | 17 | 11 | 10 | 55:37 | +18 | 62:41 | – | |
| 5 | FC Carl Zeiss Jena | 38 | 16 | 12 | 10 | 54:44 | +10 | 60:42 | – | |
| 6 | 1. FC Heidenheim | 38 | 17 | 8 | 13 | 66:56 | +10 | 59:47 | – | |
| 7 | Kickers Offenbach | 38 | 15 | 12 | 11 | 55:35 | +20 | 57:45 | – | |
| 8 | FC Bayern München II | 38 | 15 | 9 | 14 | 55:65 | -10 | 54:51 | – | |
| 9 | FC Rot-Weiß Erfurt | 38 | 14 | 11 | 13 | 41:40 | +1 | 53:50 | – | |
| 10 | VfB Stuttgart II | 38 | 16 | 4 | 18 | 52:50 | +2 | 52:58 | – | |
| 11 | SpVgg Unterhaching | 38 | 13 | 11 | 14 | 52:52 | 0 | 50:53 | – | |
| 12 | SG Dynamo Dresden | 38 | 14 | 8 | 16 | 39:46 | -7 | 50:56 | – | |
| 13 | SV Werder Bremen II | 38 | 13 | 8 | 17 | 49:54 | -5 | 47:59 | ▲ | |
| 14 | SV Sandhausen | 38 | 11 | 14 | 13 | 54:63 | -9 | 47:53 | – | |
| 15 | SV Wehen-Wiesbaden | 38 | 13 | 8 | 17 | 52:64 | -12 | 47:59 | ▼ | |
| 16 | SSV Jahn Regensburg | 38 | 11 | 13 | 14 | 43:48 | -5 | 46:55 | – | |
| 17 | SV Wacker Burghausen | 38 | 13 | 7 | 18 | 45:64 | -19 | 46:61 | ▼ | |
| 18 | Borussia Dortmund II | 38 | 11 | 6 | 21 | 43:58 | -15 | 39:69 | – | |
| 19 | Holstein Kiel | 38 | 9 | 11 | 18 | 43:61 | -18 | 38:65 | ▲ | |
| 20 | Wuppertaler SV | 38 | 10 | 8 | 20 | 40:61 | -21 | 38:68 | ▼ |