3. Liga 2009/10 Liga
| # | Team | Sp | S | U | N | Tore | Diff | Pkt | Form | Tend. |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | FC Erzgebirge Aue | 19 | 11 | 4 | 4 | 31:18 | +13 | 37:16 | – | |
| 2 | VfL Osnabrück | 19 | 10 | 6 | 3 | 25:16 | +9 | 36:15 | ▲ | |
| 3 | FC Carl Zeiss Jena | 19 | 9 | 7 | 3 | 31:16 | +15 | 34:16 | ▼ | |
| 4 | 1. FC Heidenheim | 19 | 10 | 4 | 5 | 32:25 | +7 | 34:19 | – | |
| 5 | Eintracht Braunschweig | 19 | 9 | 5 | 5 | 27:17 | +10 | 32:20 | – | |
| 6 | FC Ingolstadt 04 | 19 | 8 | 7 | 4 | 33:24 | +9 | 31:19 | ▲ | |
| 7 | FC Bayern München II | 19 | 9 | 4 | 6 | 29:29 | 0 | 31:22 | ▼ | |
| 8 | SG Dynamo Dresden | 19 | 9 | 4 | 6 | 20:20 | 0 | 31:22 | – | |
| 9 | VfB Stuttgart II | 19 | 9 | 3 | 7 | 28:22 | +6 | 30:24 | – | |
| 10 | Kickers Offenbach | 19 | 6 | 6 | 7 | 22:16 | +6 | 24:27 | ▲ | |
| 11 | FC Rot-Weiß Erfurt | 19 | 6 | 6 | 7 | 17:19 | -2 | 24:27 | ▼ | |
| 12 | SV Werder Bremen II | 19 | 6 | 5 | 8 | 24:26 | -2 | 23:29 | ▲ | |
| 13 | SV Wehen-Wiesbaden | 19 | 6 | 4 | 9 | 28:33 | -5 | 22:31 | ▼ | |
| 14 | SpVgg Unterhaching | 19 | 5 | 6 | 8 | 23:26 | -3 | 21:30 | ▲ | |
| 15 | Borussia Dortmund II | 19 | 6 | 2 | 11 | 24:31 | -7 | 20:35 | ▼ | |
| 16 | SV Sandhausen | 19 | 4 | 8 | 7 | 20:29 | -9 | 20:29 | ▼ | |
| 17 | Holstein Kiel | 19 | 4 | 7 | 8 | 21:33 | -12 | 19:31 | ▲ | |
| 18 | SSV Jahn Regensburg | 19 | 3 | 8 | 8 | 16:28 | -12 | 17:32 | ▲ | |
| 19 | Wuppertaler SV | 19 | 4 | 4 | 11 | 20:31 | -11 | 16:37 | ▼ | |
| 20 | SV Wacker Burghausen | 19 | 4 | 4 | 11 | 22:34 | -12 | 16:37 | ▼ |