3. Liga 2009/10 Liga
| # | Team | Sp | S | U | N | Tore | Diff | Pkt | Form | Tend. |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | FC Erzgebirge Aue | 37 | 20 | 8 | 9 | 56:39 | +17 | 68:35 | – | |
| 2 | VfL Osnabrück | 37 | 19 | 9 | 9 | 54:37 | +17 | 66:36 | – | |
| 3 | FC Ingolstadt 04 | 37 | 18 | 9 | 10 | 71:45 | +26 | 63:39 | ▲ | |
| 4 | Eintracht Braunschweig | 37 | 17 | 10 | 10 | 54:36 | +18 | 61:40 | ▼ | |
| 5 | FC Carl Zeiss Jena | 37 | 16 | 12 | 9 | 53:42 | +11 | 60:39 | – | |
| 6 | 1. FC Heidenheim | 37 | 17 | 7 | 13 | 64:54 | +10 | 58:46 | – | |
| 7 | Kickers Offenbach | 37 | 14 | 12 | 11 | 51:34 | +17 | 54:45 | – | |
| 8 | FC Bayern München II | 37 | 15 | 9 | 13 | 54:61 | -7 | 54:48 | ▲ | |
| 9 | FC Rot-Weiß Erfurt | 37 | 14 | 10 | 13 | 40:39 | +1 | 52:49 | ▼ | |
| 10 | VfB Stuttgart II | 37 | 15 | 4 | 18 | 50:49 | +1 | 49:58 | ▲ | |
| 11 | SpVgg Unterhaching | 37 | 12 | 11 | 14 | 48:49 | -1 | 47:53 | ▼ | |
| 12 | SG Dynamo Dresden | 37 | 13 | 8 | 16 | 36:44 | -8 | 47:56 | ▼ | |
| 13 | SV Wehen-Wiesbaden | 37 | 13 | 8 | 16 | 49:60 | -11 | 47:56 | ▼ | |
| 14 | SV Sandhausen | 37 | 11 | 13 | 13 | 53:62 | -9 | 46:52 | ▲ | |
| 15 | SV Wacker Burghausen | 37 | 13 | 7 | 17 | 45:63 | -18 | 46:58 | ▲ | |
| 16 | SSV Jahn Regensburg | 37 | 11 | 12 | 14 | 41:46 | -5 | 45:54 | ▼ | |
| 17 | SV Werder Bremen II | 37 | 12 | 8 | 17 | 47:53 | -6 | 44:59 | – | |
| 18 | Borussia Dortmund II | 37 | 11 | 6 | 20 | 40:54 | -14 | 39:66 | ▲ | |
| 19 | Wuppertaler SV | 37 | 10 | 8 | 19 | 38:58 | -20 | 38:65 | ▼ | |
| 20 | Holstein Kiel | 37 | 8 | 11 | 18 | 39:58 | -19 | 35:65 | – |