3. Liga 2009/10 Liga
| # | Team | Sp | S | U | N | Tore | Diff | Pkt | Form | Tend. |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | FC Erzgebirge Aue | 36 | 19 | 8 | 9 | 54:38 | +16 | 65:35 | – | |
| 2 | VfL Osnabrück | 36 | 18 | 9 | 9 | 51:36 | +15 | 63:36 | – | |
| 3 | Eintracht Braunschweig | 36 | 17 | 10 | 9 | 53:34 | +19 | 61:37 | ▲ | |
| 4 | FC Ingolstadt 04 | 36 | 17 | 9 | 10 | 66:44 | +22 | 60:39 | ▼ | |
| 5 | FC Carl Zeiss Jena | 36 | 16 | 11 | 9 | 52:41 | +11 | 59:38 | ▼ | |
| 6 | 1. FC Heidenheim | 36 | 16 | 7 | 13 | 61:54 | +7 | 55:46 | – | |
| 7 | Kickers Offenbach | 36 | 14 | 11 | 11 | 50:33 | +17 | 53:44 | ▲ | |
| 8 | FC Rot-Weiß Erfurt | 36 | 14 | 9 | 13 | 39:38 | +1 | 51:48 | ▲ | |
| 9 | FC Bayern München II | 36 | 14 | 9 | 13 | 52:60 | -8 | 51:48 | ▼ | |
| 10 | SpVgg Unterhaching | 36 | 12 | 11 | 13 | 47:46 | +1 | 47:50 | ▲ | |
| 11 | SG Dynamo Dresden | 36 | 13 | 8 | 15 | 36:41 | -5 | 47:53 | ▼ | |
| 12 | SV Wehen-Wiesbaden | 36 | 13 | 8 | 15 | 48:55 | -7 | 47:53 | ▼ | |
| 13 | VfB Stuttgart II | 36 | 14 | 4 | 18 | 47:48 | -1 | 46:58 | ▼ | |
| 14 | SSV Jahn Regensburg | 36 | 11 | 12 | 13 | 41:44 | -3 | 45:51 | ▲ | |
| 15 | SV Sandhausen | 36 | 11 | 12 | 13 | 52:61 | -9 | 45:51 | ▼ | |
| 16 | SV Wacker Burghausen | 36 | 13 | 6 | 17 | 44:62 | -18 | 45:57 | ▼ | |
| 17 | SV Werder Bremen II | 36 | 12 | 8 | 16 | 46:51 | -5 | 44:56 | – | |
| 18 | Wuppertaler SV | 36 | 10 | 7 | 19 | 37:57 | -20 | 37:64 | – | |
| 19 | Borussia Dortmund II | 36 | 10 | 6 | 20 | 38:54 | -16 | 36:66 | – | |
| 20 | Holstein Kiel | 36 | 8 | 11 | 17 | 38:55 | -17 | 35:62 | – |